amp_hist creates a histogram to visualise distribution of average amplification rates.

amp_hist()

Value

It will write to jpg file a histogram average amplification rates.

Details

When run it uses the "sample_error_results.csv", an output from running gen_errors, to produce a histogram to aid in visualising the distribution of amplification.

The plot is printed to screen and also saved as a jpg file to the `results/threshold/` sub-directory. It can be used to determine an amplification threshold for further data cleaning.

Author

Bart Huntley, bart.huntley@dbca.wa.gov.au

For more details see https://dbca-wa.github.io/ScatMatch/index.html the ScatMatch website

Examples

if (FALSE) {
amp_hist()
}