Amplification plots

amp_splots plots sample amplification rate against sample error rates.

amp_splots()

Value

It will write to jpg file a panel plot of amplification rates.

Details

When run it uses the sample error results, an output from running gen_errors, to produce a panel plot to aid in visualising amplification rate vs allele error and allelic drop out.

The plots are printed to screen and also saved as a jpg file to the `results/threshold/` sub-directory. It can be used to determine an amplification threshold for further data cleaning. Will error with message if no errors in raw data.

Author

Bart Huntley, bart.huntley@dbca.wa.gov.au

For more details see https://dbca-wa.github.io/ScatMatch/index.html the ScatMatch website

Examples

if (FALSE) {
amp_splots()
}