dissimilarity calculates mismatches and dissimilarity matrix between
samples from filtered data.
dissimilarity(filtered_alleles, errors)File name of the filtered numerical allele data csv as a character string.
File name of the sample error results data csv as a character string.
An updated list containing calculated mismatches between samples and calculated dissimilarity matrix. It will also contain distance objects that will aid in visualising group memberships.
When run it takes filtered data and calculates mismatches between samples and a dissimilarity matrix. Results are stored in a list. Comparing samples for the mismatches takes time and progress status is printed to screen. Distance objects are also created and can be used to create visualisations to aid in determining paramaters for group membership.
if (FALSE) {
dist <- dissimilarity(filtered_alleles = "numerical_alleles_filtered_at0.8_mt0.2.csv",
errors = "sample_error_results.csv")
}